Published in Circulation, 2022
Recommended citation: Eichelmann F, Sellem L, Wittenbecher C, Jäger S, Kuxhaus O, Prada M, Cuadrat R, Jackson KG, Lovegrove JA, Schulze MB. Deep Lipidomics in Human Plasma - Cardiometabolic Disease Risk and Effect of Dietary Fat Modulation. Circulation. 2022 Apr 15. doi: 10.1161/CIRCULATIONAHA.121.056805. Epub ahead of print. PMID: 35422138.
Published in Frontiers in Genetics, 2022
Recommended citation:
Published in Bioscience of Microbiota, Food and Health, 2022
Recommended citation: Bruno G. N. ANDRADE, Rafael R. C. CUADRAT, Fernanda Raya TONETTI, Haruki KITAZAWA, Julio VILLENA, The role of respiratory microbiota in the protection against viral diseases: respiratory commensal bacteria as next-generation probiotics for COVID-19, Bioscience of Microbiota, Food and Health, Article ID 2022-009
Published in Nature Communications, 2022
Recommended citation: Wittenbecher, C., Cuadrat, R., Johnston, L. et al. Dihydroceramide- and ceramide-profiling provides insights into human cardiometabolic disease etiology. Nat Commun 13, 936 (2022). https://doi.org/10.1038/s41467-022-28496-1
Published in Pathogens, 2021
Recommended citation: Islam, M.A.; Albarracin, L.; Tomokiyo, M.; Valdez, J.C.; Sacur, J.; Vizoso-Pinto, M.G.; Andrade, B.G.N.; Cuadrat, R.R.C.; Kitazawa, H.; Villena, J. Immunobiotic Lactobacilli Improve Resistance of Respiratory Epithelial Cells to SARS-CoV-2 Infection. Pathogens 2021, 10, 1197. https://doi.org/10.3390/pathogens10091197
Published in Nutrients, 2021
Recommended citation: Pinart, M.; Nimptsch, K.; Forslund, S.K.; Schlicht, K.; Gueimonde, M.; Brigidi, P.; Turroni, S.; Ahrens, W.; Hebestreit, A.; Wolters, M.; Dötsch, A.; Nöthlings, U.; Oluwagbemigun, K.; Cuadrat, R.R.C.; Schulze, M.B.; Standl, M.; Schloter, M.; De Angelis, M.; Iozzo, P.; Guzzardi, M.A.; Vlaemynck, G.; Penders, J.; Jonkers, D.M.A.E.; Stemmer, M.; Chiesa, G.; Cavalieri, D.; De Filippo, C.; Ercolini, D.; De Filippis, F.; Ribet, D.; Achamrah, N.; Tavolacci, M.-P.; Déchelotte, P.; Bouwman, J.; Laudes, M.; Pischon, T. Identification and Characterization of Human Observational Studies in Nutritional Epidemiology on Gut Microbiomics for Joint Data Analysis. Nutrients 2021, 13, 3292. https://doi.org/10.3390/nu13093292
Published in Nutrients, 2021
Recommended citation: Goris, T.; Cuadrat, R.R.C.; Braune, A. Flavonoid-Modifying Capabilities of the Human Gut Microbiome—An In Silico Study. Nutrients 2021, 13, 2688.
Published in BMC Microbiology, 2021
Recommended citation: Andrade BGN, Goris T, Afli H, Coutinho FH, Dávila AMR, Cuadrat RRC. Putative mobilized colistin resistance genes in the human gut microbiome. BMC Microbiology. 2021;21:220.
Published in Cardiovascular Diabetology, 2021
Recommended citation: Birukov, A.; Cuadrat, R.; Polemiti, E.; Eichelmann, F.; Schulze, M.B. Advanced glycation end-products, measured as skin autofluorescence, associate with vascular stiffness in diabetic, pre-diabetic and normoglycemic individuals: a cross-sectional study. Cardiovascular Diabetology 2021.
Published in Pathogens, 2021
Recommended citation: Islam, M.D.A.; Albarracin,L.; Melnikov, V.;,Andrade,B.G.N.; Cuadrat, R.; Kitazawa, H.; Eichelmann, F.; Villena, J. Dolosigranulum pigrum Modulates Immunity against SARS-CoV-2 in Respiratory Epithelial Cells. Pathogens. 2021.
Published in Frontiers in Microbiology, 2021
Recommended citation: Maria Paz Ventero*; Rafael R C Cuadrat*; Inmaculada Vidal; Bruno G N Andrade; Carmen Molina-Pardines; Jose M Haro-Moreno; Felipe H Coutinho; Esperanza Merino; Luciana C A Regitano; Cynthia B Silveira; Haithem Afli; Mario López-Pérez; Juan Carlos Rodríguez. Nasopharyngeal Microbial Communities of Patients Infected With SARS-CoV-2 That Developed COVID-19. Frontiers in Microbiology 2021.
Published in Diabetes Care, 2021
Recommended citation: Obesity Partially Mediates the Diabetogenic Effect of Lowering LDL Cholesterol. Peitao Wu, Jee-Young Moon, Iyas Daghlas, Giulianini Franco, Bianca C. Porneala, Fariba Ahmadizar, Tom G. Richardson, Jonas L. Isaksen, Georgy Hindy, Jie Yao, Colleen M. Sitlani, Laura M. Raffield, Lisa R. Yanek, Mary F. Feitosa, Rafael R.C. Cuadrat, Qibin Qi, M. Arfan Ikram, Christina Ellervik, Ulrika Ericson, Mark O. Goodarzi, Jennifer A. Brody, Leslie Lange, Josep M. Mercader, Dhananjay Vaidya, Ping An, Matthias B. Schulze, Lluis Masana, Mohsen Ghanbari, Morten S. Olesen, Jianwen Cai, Xiuqing Guo, James S. Floyd, Susanne Jäger, Michael A. Province, Rita R. Kalyani, Bruce M. Psaty, Marju Orho-Melander, Paul M. Ridker, Jørgen K. Kanters, Andre Uitterlinden, George Davey Smith, Dipender Gill, Robert C. Kaplan, Maryam Kavousi, Sridharan Raghavan, Daniel I. Chasman, Jerome I. Rotter, James B. Meigs, Jose C. Florez, Josée Dupuis, Ching-Ti Liu, Jordi Merino Diabetes Care Nov 2021, dc211284; DOI: 10.2337/dc21-1284
Published in Nutrients, 2020
Recommended citation: Jäger, S.; Cuadrat, R.; Wittenbecher, C.; Floegel, A.; Hoffmann, P.; Prehn, C.; Adamski, J.; Pischon, T.; Schulze, M.B. Mendelian Randomization Study on Amino Acid Metabolism Suggests Tyrosine as Causal Trait for Type 2 Diabetes. Nutrients 2020, 12, 3890. https://doi.org/10.3390/nu12123890
Published in Nutrients, 2020
Recommended citation: Jäger, S.; Cuadrat, R.; Hoffmann, P.; Wittenbecher, C.; Schulze, M.B. Desaturase Activity and the Risk of Type 2 Diabetes and Coronary Artery Disease: A Mendelian Randomization Study. Nutrients 2020, 12, 2261.
Published in Journal of animal science and biotechnology, 2020
Use Google Scholar for full citation
Recommended citation: Bruno Andrade, Flavia Bressani, Rafael Cuadrat, Polyana Tizioto, Priscila Oliveira, Gerson Mourão, Luiz Coutinho, James Reecy, James Koltes, Paul Walsh, Alexandre Berndt, Julio Palhares, Luciana Regitano, "The structure of microbial populations in Nelore GIT reveals inter-dependency of methanogens in feces and rumen.." Journal of animal science and biotechnology, 2020.
Published in Glycobiology, 2020
Recommended citation: Sodbo Zh Sharapov, Alexandra S Shadrina, Yakov A Tsepilov, Elizaveta E Elgaeva, Evgeny S Tiys, Sofya G Feoktistova, Olga O Zaytseva, Frano Vuckovic, Rafael Cuadrat et al, "Replication of 15 loci involved in human plasma protein N-glycosylation in 4802 samples from four cohorts." Glycobiology, 2020. http://doi.org/10.1093/glycob/cwaa053
Published in GigaScience, 2020
Recommended citation: Rafael Cuadrat, Maria Sorokina, Bruno Andrade, Tobias Goris, Alberto Dávila, "Global ocean resistome revealed: Exploring antibiotic resistance gene abundance and distribution in TARA Oceans samples." GigaScience, 2020. http://doi.org/10.1093/gigascience/giaa046
Published in Frontiers in microbiology, 2018
Use Google Scholar for full citation
Recommended citation: Rafael Cuadrat, Danny Ionescu, Alberto Dávila, Hans-Peter Grossart, "Recovering Genomics Clusters of Secondary Metabolites from Lakes Using Genome-Resolved Metagenomics.." Frontiers in microbiology, 2018.
Published in Evolutionary bioinformatics online, 2018
Use Google Scholar for full citation
Recommended citation: Darueck Campos, Elisa Pereira, Rodrigo Jardim, Rafael Cuadrat, Juliana Bernardes, Alberto Dávila, "Homology Inference Based on a Reconciliation Approach for the Comparative Genomics of Protozoa.." Evolutionary bioinformatics online, 2018.
Published in Omics : a journal of integrative biology, 2016
Use Google Scholar for full citation
Recommended citation: Rafael Cuadrat, Isabel Ferrera, Hans-Peter Grossart, Alberto Dávila, "Picoplankton Bloom in Global South? A High Fraction of Aerobic Anoxygenic Phototrophic Bacteria in Metagenomes from a Coastal Bay (Arraial do Cabo--Brazil).." Omics : a journal of integrative biology, 2016.
Published in Frontiers in microbiology, 2016
Use Google Scholar for full citation
Recommended citation: Adriana Fróes, Fábio Mota, Rafael Cuadrat, Alberto Dávila, "Distribution and Classification of Serine ?-Lactamases in Brazilian Hospital Sewage and Other Environmental Metagenomes Deposited in Public Databases.." Frontiers in microbiology, 2016.
Published in International journal of molecular sciences, 2015
Use Google Scholar for full citation
Recommended citation: Cuadrat RR, Cury JC, Dávila AM, "Metagenomic Analysis of Upwelling-Affected Brazilian Coastal Seawater Reveals Sequence Domains of Type I PKS and Modular NRPS.." International journal of molecular sciences, 2015.
Published in Omics : a journal of integrative biology, 2014
Use Google Scholar for full citation
Recommended citation: Rafael Cuadrat, Sérgio Serra, Diogo Tschoeke, Edno Silva, Frederico Tosta, Henrique Jucá, Rodrigo Jardim, Maria Campos, Marta Mattoso, Alberto Dávila, "An orthology-based analysis of pathogenic protozoa impacting global health: an improved comparative genomics approach with prokaryotes and model eukaryote orthologs.." Omics : a journal of integrative biology, 2014.
Published in International journal of data mining and bioinformatics, 2010
Use Google Scholar for full citation
Recommended citation: da SM, Batista V, Silva E, Tosta F, Vilela C, Cuadrat R, Tschoeke D, Dávila AM, Campos ML, Mattoso M, "Detecting distant homologies on protozoans metabolic pathways using scientific workflows.." International journal of data mining and bioinformatics, 2010.
Published in Nucleic acids research, 2008
Use Google Scholar for full citation
Recommended citation: Alberto Dávila, Pablo Mendes, Glauber Wagner, Diogo Tschoeke, Rafael Cuadrat, Felipe Liberman, Luciana Matos, Thiago Satake, Kary Ocaña, Omar Triana, Sérgio Cruz, Henrique Jucá, Juliano Cury, Fabricio Silva, Guilherme Geronimo, Margarita Ruiz, Eduardo Ruback, Floriano Silva, Christian Probst, Edmundo Grisard, Marco Krieger, Samuel Goldenberg, Maria Cavalcanti, Milton Moraes, Maria Campos, Marta Mattoso, "ProtozoaDB: dynamic visualization and exploration of protozoan genomes.." Nucleic acids research, 2008.